SalmoNet 2.0

An integrated multi-layered network of Salmonella

Browse Download


Features

  • An integrated network resource containing regulatory, metabolic and protein-protein interactions
  • For 20 Salmonella strains classified as gastro-intestinal or extra-intestinal pathogens
  • An interaction resource with manually curated, high-throughput and predicted interactions
  • Provides a strain specific and consensus networks
  • Can be downloaded in a user-specified content and format

Statistics

Components

Strains
20
Orthologous Genes
3 016
Orthologous Transcription factors
231
Orthologous Metabolic enzymes
2 148

Interactions

Total interactions
190 443
Protein-protein interactions
62 833
Regulatory interactions
65 448
Metabolic interactions
62 162

Strains

  • Salmonella agona (strain SL483)
  • Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
  • Salmonella bongori (strain ATCC 43975 / DSM 13772 / NCTC 12419)
  • Salmonella choleraesuis (strain SC-B67)
  • Salmonella dublin (strain CT_02021853)
  • Salmonella enteritidis PT4 (strain P125109)
  • Salmonella gallinarum (strain 287/91 / NCTC 13346)
  • Salmonella heidelberg (strain SL476)
  • Salmonella newport (strain SL254)
  • Salmonella paratyphi A (strain AKU_12601)
  • Salmonella paratyphi A (strain ATCC 9150 / SARB42)
  • Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
  • Salmonella paratyphi C (strain RKS4594)
  • Salmonella schwarzengrund (strain CVM19633)
  • Salmonella typhi
  • Salmonella typhimurium (strain 14028s / SGSC 2262)
  • Salmonella typhimurium (strain 4/74)
  • Salmonella typhimurium (strain D23580)
  • Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
  • Salmonella typhimurium (strain SL1344)

Cite

Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level. Olbei M., Bohar B., Fazekas D., Madgwick M., Sudhakar P., Hautefort I., Métris A., Baranyi J., Kingsley R.A., Korcsmáros T.
mSystems e01493-21 (2022) doi:10.1128/msystems.01493-21

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation. Métris A., Sudhakar P., Fazekas D., Demeter A., Ari E., Branchu P, Kingsley R.A., Baranyi J., Korcsmáros T.
npj Systems Biology and Applications 3, Article number: 31 (2017) doi:10.1038/s41540-017-0034-z

Contact